Author

J. K. Stone

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

C. C. Harris· 3 shared K. L. Greathouse· 2 shared A. A. Schäffer· 1 shared A. Choudhury· 1 shared A. I. Robles· 1 shared A. J. Vargas· 1 shared A. Jung· 1 shared A. Miyanaga· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersCancer Biology

C. C. Harris

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3 papers

Recent·Most cited

Co-enrichment of cancer-associated bacterial taxa is correlated with immune cell infiltrates in esophageal tumor tissue

K. L. Greathouse, J. K. Stone, A. J. Vargas, A. Choudhury, N. Padgett, J. R. White, A. Jung, C. C. Harris

The paper identifies four bacterial taxa enriched in esophageal cancer and links their co-occurrence to immune cell infiltration patterns in tumor tissues.

bioRxiv · May 29, 2023Cancer Biology

Acidovorax temperans polarizes T17 cells and skews neutrophil maturation to promote lung adenocarcinoma development

J. K. Stone, N. von Muhlinen, C. Zhang, A. I. Robles, E. Vega-Valle, A. Miyanaga, M. Matsumoto, K. L. Greathouse, T. Cooks, G. Trinchieri, C. C. Harris

This study shows Acidovorax temperans promotes lung adenocarcinoma by altering neutrophil maturation and T17 cell polarization, enhancing tumor-associated inflammation.

bioRxiv · Dec 20, 2022 · PreprintCancer Biology

scRNA-seq analysis of colon and esophageal tumors uncovers abundant microbial reads in myeloid cells undergoing proinflammatory transcriptional alterations

W. Robinson, J. K. Stone, F. Schischlik, B. Gasmi, M. C. Kelly, C. Seibert, K. Dadkhah, E. M. Gertz, J. S. Lee, K. Zhu, L. Ma, X. W. Wang, C. Sahinalp, R. Patro, M. D. Leiserson, , E. Ruppin

The paper develops a computational pipeline to identify microbial reads in scRNA-seq data and finds that microbial reads are enriched in myeloid cells with proinflammatory transcriptional changes.

bioRxiv · May 14, 2020 · PreprintCancer Biology