Author

R. Runnebaum

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:yeast· 2 Research Focus:clustering· 1 Approach:deep learning· 1 Approach:diffusion model· 1

Frequent Co-Authors

B. Montpetit· 3 shared R. Montpetit· 3 shared T. Reiter· 3 shared D. Hernandez· 2 shared E. Leon· 2 shared I. Frias· 2 shared M. Mcloughlin· 2 shared R. Viano· 2 shared

Activity by Year

2021-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

B. Montpetit

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Mapping global shifts in Saccharomyces cerevisiae gene expression across asynchronous time trajectories with diffusion maps

T. Reiter, R. Montpetit, R. Runnebaum, C. T. Brown, B. Montpetit

The paper develops a method to analyze asynchronous gene expression time series in yeast fermentations, identifying vineyard-specific gene expression deviations linked to fermentation outcomes.

bioRxiv · Feb 11, 2021Microbiology

Saccharomyces cerevisiae gene expression during fermentation of Pinot noir wines at industrially relevant scale

T. Reiter, R. Montpetit, S. Byer, I. Frias, E. Leon, R. Viano, M. Mcloughlin, T. Halligan, D. Hernandez, R. Runnebaum, B. Montpetit

This study analyzes Saccharomyces cerevisiae gene expression during Pinot noir wine fermentation at pilot scale, identifying both common and novel expression patterns related to industrial conditions.

bioRxiv · Jan 11, 2021Microbiology

Transcriptomics provides a genetic signature of vineyard site with insight into vintage-independent regional wine characteristics

T. Reiter, R. Montpetit, S. Byer, I. Frias, E. Leon, R. Viano, M. Mcloughlin, T. Halligan, D. Hernandez, R. Figueroa-Balderas, D. Cantu, K. Steenwerth, R. Runnebaum, B. Montpetit

The paper identifies genetic signatures of vineyard sites in wine fermentation, showing that microbial DNA presence does not correlate with gene expression but that gene expression patterns can distinguish regional wine characteristics.

bioRxiv · Jan 7, 2021 · PreprintMicrobiology