Author

Riki Shimada

Gifu University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genetics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Assay:Hi-C· 1 Approach:statistical model· 1 Approach:wet-lab / biochemical assay· 1

Frequent Co-Authors

Akiyoshi Tominaga· 2 shared Hideki HirakawaiD· 2 shared Kenta ShirasawaiD· 2 shared Naoyuki TajimaiD· 2 shared Sachiko IsobeiD· 2 shared Atsushi ToyodaiD· 1 shared Hidehiro TohiD· 1 shared Hiroshi FujiiiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenetics

Akiyoshi Tominaga

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2 papers

Recent·Most cited

A naturally occurring frameshift mutation in the UNUSUAL FLORAL ORGANS gene associated with the marimo floral phenotype in gerbera

Taro Hattori, Riki Shimada, Moe Nagakura, Ryõ Andõ, Sachiko Isobe, Naoyuki Tajima, Hideki Hirakawa, Kenta Shirasawa, Akiyoshi Tominaga

The paper identifies a frameshift mutation in the UFO gene causing the marimo floral phenotype in gerbera by disrupting the LFY-UFO regulatory module.

bioRxiv · Aug 18, 2026 · PreprintGenetics

Chromosome-level genome assembly of the gerbera (Gerbera hybrida) using HiFi long-read and Hi-C technologies

Yuta Aoyagi Blue, Riki Shimada, Hideki Hirakawa, Atsushi Toyoda, Hidehiro Toh, Sachiko Isobe, Naoyuki Tajima, Kenta Shirasawa, Tokumasa Horiike, Hiroshi Fujii, Tao Fujiwara, Masaru Bamba, Takashi Nakatsuka, Akiyoshi Tominaga

The paper presents a chromosome-level genome assembly of Gerbera hybrida using HiFi and Hi-C technologies, providing annotated nuclear, mitochondrial, and chloroplast genomes.

DNA Research · Jan 9, 2026Peer-reviewedPlant Biology