Author

S. B. Carey

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Evolutionary Biology· 4 Plant Biology· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:whole-genome sequencing· 5 Organism:plant (other)· 4 Approach:experimental assay· 3 Organism:mouse· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2

Frequent Co-Authors

A. C. Payton· 4 shared S. F. McDaniel· 4 shared A. Harkess· 2 shared A. Lipzen· 2 shared C. Daum· 2 shared G. P. Tiley· 2 shared J. Grimwood· 2 shared J. Jenkins· 2 shared

Activity by Year

2020-2024 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersEvolutionary Biology

A. C. Payton

Mutual co-authors in cluster

Author profile →

7 papers

Recent·Most cited

Parameterizing Pantherinae: de novo mutation rate estimates from Panthera and Neofelis pedigrees

E. E. Armstrong, S. B. Carey, A. Harkess, G. Zenato Lazzari, K. A. Solari, J. E. Maldonado, R. C. Fleischer, N. Aziz, P. Walsh, K.-P. Koepfli, E. Eizirik, D. A. Petrov, M. Campana

The paper estimates de novo mutation rates in Panthera and Neofelis species using pedigrees, finding rates between 0.5 and 1.4e-08 per generation per base pair.

bioRxiv · Apr 6, 2024Evolutionary Biology

Chromosome-level genome assembly of Euphorbia peplus, a model system for plant latex, reveals that relative lack of Ty3 transposons contributed to its small genome size

A. R. Johnson, Y. Yue, S. B. Carey, S. J. Park, L. H. Kruse, A. Harkess, A. Bao, A. Pasha, N. J. Provart, G. D. J. Moghe, M. Frank

This paper presents a chromosome-level genome assembly of Euphorbia peplus, identifies a gene cluster for ingenol mebutate biosynthesis, and explains its small genome size through restricted Ty3 transposon expansion.

bioRxiv · Oct 13, 2022 · PreprintPlant Biology

Novel insights into joint estimations of demography, mutation rate, and selection using UV sex chromosomes

S. B. Carey, J. H. Peniston, A. C. Payton, M. Kim, A. Lipzen, D. Bauer, K. Lail, C. Daum, K. Barry, J. Jenkins, J. Grimwood, J. Schmutz, S. F. McDaniel

This study examines how anisogamy influences genetic variation in moss using UV sex chromosomes, finding sex-biased mutation and selection but no model explaining observed diversity ratios.

bioRxiv · Mar 30, 2021 · PreprintEvolutionary Biology

Microarthropod contributions to fitness variation in the common moss Ceratodon purpureus

E. E. Shortlidge, A. C. Payton, S. B. Carey, S. F. McDaniel, T. N. Rosenstiel, S. M. Eppley

The paper tests the effect of microarthropods on moss reproduction and finds increased reproductive rates and altered genotype fitness rankings.

bioRxiv · Dec 2, 2020Plant Biology

The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes

S. B. Carey, J. Jenkins, J. T. Lovell, F. Maumus, A. Sreedasyam, A. C. Payton, S. Shu, G. P. Tiley, N. Fernandez-Pozo, K. Barry, C. Chen, M. Wang, A. Lipzen, C. Daum, C. A. Saski, , S. McDaniel

The paper compares genomes of male and female mosses to study sex chromosome evolution, finding gene-rich, non-degenerated UV sex chromosomes.

bioRxiv · Jul 3, 2020 · PreprintEvolutionary Biology

A target enrichment probe set for resolving the flagellate plant tree of life

J. W. Breinholt, S. B. Carey, G. P. Tiley, E. C. Davis, L. Endara, S. F. McDaniel, L. G. Neves, E. B. Sessa, M. von Konrat, S. Chantanaorrapint, S. Fawcett, S. M. Ickert-Bond, P. H. Labiak, J. Larrain, M. Lehnert, , J. G. Burleigh

The paper introduces a target enrichment probe set for generating nuclear sequence data to resolve phylogenetic relationships among flagellate plants.

bioRxiv · May 29, 2020Evolutionary Biology

Area from image analyses accurately estimates dry-weight biomass of juvenile moss tissue

W. P. Burtscher, M. A. List, A. C. Payton, S. F. McDaniel, S. B. Carey

The paper evaluates the relationship between area and biomass in juvenile moss tissue and shows inoculum size affects biomass but not area after the first week.

bioRxiv · Mar 20, 2020Plant Biology