Author

A. Sreedasyam

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Evolutionary Biology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 6 Approach:statistical model· 5 Assay:whole-genome sequencing· 4 Assay:bulk RNA-seq· 3 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2 Research Focus:development & morphogenesis· 2 Approach:experimental assay· 2

Frequent Co-Authors

J. Grimwood· 5 shared J. Schmutz· 5 shared J. T. Lovell· 4 shared S. Shu· 4 shared A. Lipzen· 2 shared B. Weers· 2 shared C. Chen· 2 shared C. Daum· 2 shared

Activity by Year

2017-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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5 shared papersPlant Biology

J. Grimwood

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Author profile →

7 papers

Recent·Most cited

Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean

M. J. C. Espina, J. T. Lovell, J. W. Jenkins, S. Shu, A. Sreedasyam, B. D. Jordan, j. Webber, L. Boston, T. Bruna, J. Talag, D. M. Goodstein, J. Grimwood, G. Stacey, S. B. Cannon, A. Lorenz, , R. M. Stupar

This paper presents an updated soybean genome assembly (Wm82.a6) and compares it with other assemblies and Fiskeby III, revealing genomic heterogeneity and polymorphisms.

bioRxiv · Apr 26, 2024Plant Biology

JGI Plant Gene Atlas: An updateable transcriptome resource to improve structural annotations and functional gene descriptions across the plant kingdom

A. Sreedasyam, C. Plott, M. S. Hossain, J. T. Lovell, J. Grimwood, J. W. Jenkins, C. Daum, K. Barry, J. Carlson, S. Shu, J. Phillips, M. Amirebrahimi, M. Zane, M. Wang, D. Goodstein, , E Cooper

The paper introduces the JGI Plant Gene Atlas, a resource that improves gene function annotations by analyzing transcript abundance across 18 species and 604 tissues, identifying 64,620 genes with unknown functions.

bioRxiv · Sep 30, 2022 · PreprintPlant Biology

Host genetic control of succession in the switchgrass leaf fungal microbiome

A. VanWallendael, G. M. N. Benucci, P. B. da Costa, L. Fraser, G. Bonito, F. B. Fritschi, T. E. Juenger, J. T. Lovell, A. Sreedasyam, D. Lowry

The paper examines how host genetics influence fungal microbiome succession in switchgrass leaves across time and environments, identifying immune-related genes linked to microbiome structure.

PLOS Biology · Aug 11, 2022Peer-reviewedEcology

Transcriptome and DNA methylome dynamics reveal differential characteristics of inflorescence development between two ecotypes in Panicum hallii

X. Weng, H. Song, A. Sreedasyam, T. Haque, L. Zhang, C. Chen, Y. Yoshinaga, M. Williams, R. C. O'Malley, J. Grimwood, J. Schmutz, T. E. Juenger

A comparative transcriptome and DNA methylome analysis of inflorescence between upland and lowland ecotypes reveals gene expression and DNA methylation variation underlying inflorescence divergence in Panicum hallii.

bioRxiv · Feb 28, 2022 · PreprintEvolutionary Biology

The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes

S. B. Carey, J. Jenkins, J. T. Lovell, F. Maumus, A. Sreedasyam, A. C. Payton, S. Shu, G. P. Tiley, N. Fernandez-Pozo, K. Barry, C. Chen, M. Wang, A. Lipzen, C. Daum, C. A. Saski, , S. McDaniel

The paper compares genomes of male and female mosses to study sex chromosome evolution, finding gene-rich, non-degenerated UV sex chromosomes.

bioRxiv · Jul 3, 2020 · PreprintEvolutionary Biology

Soybean Haplotype Map (GmHapMap): A Universal Resource for Soybean Translational and Functional Genomics

D. Torkamaneh, J. Laroche, B. Valliyodan, L. O'Donoughue, E. Cober, I. Rajcan, R. Vilela Abdelnoor, A. Sreedasyam, J. Schmutz, H. T. Nguyen, F. Belzile

The paper constructs a soybean haplotype map (GmHapMap) using whole-genome sequences, identifies a causal SNP for seed oil content, and predicts LOF mutations to aid in soybean genomics and breeding.

bioRxiv · Jan 29, 2019 · PreprintPlant Biology

The Sorghum bicolor reference genome: improved assembly and annotations, a transcriptome atlas, and signatures of genome organization

R. F. McCormick, S. K. Truong, A. Sreedasyam, J. Jenkins, S. Shu, D. Sims, M. Kennedy, M. Amirebrahimi, B. Weers, B. McKinley, A. Mattison, D. Morishige, J. Grimwood, J. Schmutz, J. Mullet

This paper improves the Sorghum bicolor reference genome, annotates it, and constructs a transcriptome atlas, revealing genomic features and gene expression patterns across developmental stages.

bioRxiv · Feb 21, 2017Plant Biology