Author

S. Banakis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:mouse· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

E. Ghedin· 2 shared W. Wang· 2 shared A. Grakoui· 1 shared A. Kreitman· 1 shared A. Pinto· 1 shared A. Roder· 1 shared A. Vanderheiden· 1 shared B. Wang· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersImmunology

E. Ghedin

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

CD4+ and CD8+ T cells are required to prevent SARS-CoV-2 persistence in the nasal compartment

M. Kar, K. E. E. Johnson, A. Vanderheiden, E. J. Elrod, K. Floyd, E. Geerling, E. T. Stone, E. Salinas, S. Banakis, W. Wang, S. Sathish, S. Shrihari, M. E. Davis-Gardner, J. Kohlmeier, A. Pinto, , M. S. Suthar

This study shows that CD4+ and CD8+ T cells are necessary to prevent SARS-CoV-2 persistence in the nasal compartment but not in the lungs.

bioRxiv · Jan 23, 2024Immunology

Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data

A. Roder, K. E. Johnson, M. Knoll, M. Khalfan, B. Wang, S. Schultz-Cherry, S. Banakis, A. Kreitman, C. Mederos, J.-H. Youn, R. Mercado, W. Wang, D. Ruchnewitz, M. I. Samanovic, M. J. Mulligan, , E. Ghedin

This study evaluates variant calling tools for detecting minority variants in viral sequencing data and provides guidance for accurate quantification of intrahost viral diversity.

bioRxiv · May 5, 2021 · PreprintMicrobiology