Author

S. C. Dantu

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4

Signature Assays, Organisms & Methods

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Research Focus:protein folding & dynamics· 3 Approach:mechanistic / dynamical model· 2 Assay:structural biology· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Assay:protein structure· 1

Frequent Co-Authors

G. Sicoli· 2 shared A. Mey· 1 shared A. Pandini· 1 shared A. Ramanathan· 1 shared B. Islam· 1 shared C. Saint-Pierre· 1 shared D. BHOWMIK· 1 shared D. Gasparutto· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBiophysics

G. Sicoli

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4 papers

Recent·Most cited

Cleaving DNA with DNA: cooperative tuning of structure and reactivity driven by copper ions

S. C. Dantu, M. Khalil, M. Bria, C. Saint-Pierre, D. Gasparutto, G. Sicoli

The paper analyzes a copper-dependent DNAzyme using molecular dynamics and EPR/ESR spectroscopy to reveal structural and mechanistic details of its self-cleavage reaction.

bioRxiv · Jun 6, 2023Biophysics

Structural dynamics of the β-coronavirus Mpro protease ligand binding sites

E. Cho, M. Rosa, R. Anjum, S. Mehmood, M. Soban, M. Mujtaba, K. Bux, S. C. Dantu, A. Pandini, J. Yin, H. Ma, A. Ramanathan, B. Islam, A. Mey, D. BHOWMIK, S. Haider

The paper compares ligand-binding sites of Mpro proteases from SARS-CoV2, SARS-CoV, and MERS-CoV using deep learning and Markov state models to assess structural dynamics and conservation.

bioRxiv · Mar 31, 2021 · PreprintBiophysics

The 'hidden side' of spin labeled oligonucleotides: Molecular Dynamics study focusing on the EPR-silent components of base pairing

S. C. Dantu, G. Sicoli

This study uses molecular dynamics simulations to analyze how different spin labels affect RNA structures, providing insights for choosing appropriate labels in EPR studies.

bioRxiv · Apr 8, 2020Biophysics

Conformational dynamics of active site loops 5, 6 and 7 of enzyme Triosephosphate Isomerase: A molecular dynamics study

S. C. Dantu, G. Groenhof

This study uses molecular dynamics simulations to analyze conformational changes in loops 6 and 7 of Triosephosphate Isomerase, revealing their dynamic behavior in different ligand-bound states.

bioRxiv · Nov 3, 2018 · PreprintBiophysics