Author

S. Choudhery

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

E. J. Rubin· 2 shared T. R. Ioerger· 2 shared A. J. Brown· 1 shared B. S. Benghomari· 1 shared C. Akusobi· 1 shared C. D. Akusobi· 1 shared C. M. Sassetti· 1 shared I. D. Wolf· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 24 mutual co-author links

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2 shared papersMicrobiology

E. J. Rubin

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Transposon-sequencing across multiple Mycobacterium abscessus isolates reveals significant functional genomic diversity among strains

C. Akusobi, S. Choudhery, B. S. Benghomari, I. D. Wolf, S. Singhvi, T. R. Ioerger, E. J. Rubin

This study uses transposon-sequencing to analyze functional genomic diversity across 21 Mycobacterium abscessus isolates, identifying essential and non-essential genes and previously uncharacterized genetic networks.

bioRxiv · Mar 29, 2023Microbiology

Modeling site-specific nucleotide biases affecting Himar1 transposon insertion frequencies in TnSeq datasets

S. Choudhery, A. J. Brown, C. D. Akusobi, E. J. Rubin, C. M. Sassetti, T. R. Ioerger

This paper identifies site-specific nucleotide biases affecting Himar1 transposon insertion frequencies in TnSeq datasets and introduces a new method to improve the identification of conditionally essential genes.

bioRxiv · Jul 1, 2021Microbiology