Author

S. L. Farhi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1

Frequent Co-Authors

A. Yeaton· 1 shared B. A. Goods· 1 shared C. Gao· 1 shared C. J. Wu· 1 shared C. Mangum· 1 shared C. Park· 1 shared C. Shin· 1 shared D. Abbondanza· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperCancer Biology

A. Yeaton

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2 papers

Recent·Most cited

Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy

K. Maurer, C. Park, S. Mani, M. Borji, L. Penter, Y. Jin, J. Y. Zhang, C. Shin, J. R. Brenner, J. Southard, S. Krishna, W. Lu, H. Lyu, D. Abbondanza, C. Mangum, , E. Azizi

The paper analyzes single-cell data from bone marrow samples to identify immune cell interactions that predict response to adoptive cellular therapy in myeloid leukemia.

bioRxiv · Feb 9, 2024 · PreprintCancer Biology

Systematic benchmarking of imaging spatial transcriptomics platforms in FFPE tissues

H. Wang, R. Huang, J. Nelson, C. Gao, M. Tran, A. Yeaton, K. Felt, K. L. Pfaff, T. Bowman, S. J. Rodig, K. Wei, B. A. Goods, S. L. Farhi

This study benchmarks three imaging spatial transcriptomics platforms on FFPE tissues, finding 10x Xenium has higher transcript counts without sacrificing specificity, while all platforms align with RNA-seq data but vary in performance metrics.

bioRxiv · Dec 7, 2023Cancer Biology