Author

S. M. Beeler

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biophysics· 1

Signature Assays, Organisms & Methods

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Organism:E. coli· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

D. M. Stoebel· 2 shared A. J. Lee Fong· 1 shared A. Moradian· 1 shared A. N. Schep· 1 shared C. Evans· 1 shared C. J. Becker· 1 shared C. R. Doering· 1 shared E. C. Bush· 1 shared

Activity by Year

2017-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersMicrobiology

D. M. Stoebel

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Author profile →

3 papers

Recent·Most cited

Deciphering the regulatory genome of Escherichiacoli, one hundred promoters at a time

W. T. Ireland, S. M. Beeler, E. Flores-Bautista, N. M. Belliveau, M. J. Sweredoski, A. Moradian, J. B. Kinney, R. Phillips

The paper introduces a method to characterize promoter regulation in E. coli by analyzing 100 promoters across 12 growth conditions, identifying regulatory elements and transcription factors.

bioRxiv · Jan 18, 2020Biophysics

The transcriptional response of genes to RpoS concentration in Escherichia coli is not determined by core promoter sequences

S. M. Beeler, C. R. Doering, S. Tran, D. M. Stoebel

The paper investigates whether RpoS binding site sequences determine gene sensitivity to RpoS concentration in E. coli and finds they do not.

bioRxiv · Oct 8, 2019 · PreprintMicrobiology

The genome-wide transcriptional response to varying RpoS levels in Escherichia coli K-12

G. T. Wong, R. P. Bonocora, A. N. Schep, S. M. Beeler, A. J. Lee Fong, L. M. Shull, L. E. Batachari, M. Dillon, C. Evans, C. J. Becker, E. C. Bush, J. Hardin, J. T. Wade, D. M. Stoebel

This study examines how varying RpoS levels affect the transcriptome of E. coli during stationary phase, identifying gene regulation patterns and promoter sensitivity mechanisms.

bioRxiv · Jan 11, 2017Microbiology