I. Csabai

Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma.

This paper identifies NER deficiency as a targetable vulnerability in ccRCC, showing that 10% of patients may respond to irofulven based on mutational signatures and PTGR1 expression.

Epigenetic Regulation Explains The Functionality Behind Colon Cancer Specific Biomarker Septin9

This study investigates the epigenetic regulation of Septin9 variants in colorectal cancer, finding hypermethylation at the v2 promoter leads to alternative transcription and potential functional differences.

Diagnostic tool to identify and treat DNA repair deficient gastroesophageal adenocarcinomas

This study identifies HR and NER deficiencies in gastric and esophageal adenocarcinomas and shows their responsiveness to platinum chemotherapy and PARP inhibitors.

Understanding and predicting ciprofloxacin minimum inhibitory concentration in Escherichia coli with machine learning

This paper predicts ciprofloxacin minimum inhibitory concentration in Escherichia coli using machine learning based on genome-wide mutation profiles and antimicrobial resistance gene presence.

A subset of lung cancer cases shows robust signs of homologous recombination deficiency associated genomic aberration based molecular signatures

The paper identifies HRD-associated mutational signatures in lung cancer cases and links them to PARP inhibitor sensitivity and platinum response.

Genomic aberration based molecular signatures efficiently characterize homologous recombination deficiency in prostate cancer

The paper identifies genomic aberration-based molecular signatures to detect homologous recombination deficiency in prostate cancer, finding that 5-8% of cases may benefit from PARP-inhibitor treatment.

Accelerating surveillance and research of antimicrobial resistance - an online repository for sharing of antimicrobial susceptibility data associated with whole genome sequences

The paper introduces an online repository for sharing antimicrobial susceptibility data linked to whole genome sequences to enhance AMR surveillance and research.

Breast cancer brain metastases show increased levels of genomic aberration based homologous recombination deficiency scores relative to their corresponding primary tumors

The paper compares HRD scores in primary breast cancer tumors and their brain metastases, finding higher HRD in metastases, suggesting potential changes in PARP inhibitor therapy strategies.