Author

Shashank Gupta

University of CopenhagenPrimary ORCID profile (0000-0001-8839-7003 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Shashank GuptaiD1 paper · Norwegian University of Life Sciences

Biology Disciplines

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Bioinformatics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Asker BrejnrodiD· 1 shared Christopher RensingiD· 1 shared Gisle VestergaardiD· 1 shared Joseph NesmeiD· 1 shared Manimozhiyan ArumugamiD· 1 shared Megha S. Uppin· 1 shared Nameeta ShahiD· 1 shared Pranali SonpatkiiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Asker BrejnrodORCID

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2 papers

Recent·Most cited

Cross-Modal Training Using Xenium Spatial Transcriptomics Enables DINO-DETR Based Detection of Vascular Niches in H&E Whole-Slide Images

Pranali Sonpatki, Ramya Alugam, Shashank Gupta, Nameeta Shah, Megha S. Uppin

This paper develops a DINO-DETR model trained on spatial transcriptomics data to detect vascular niches in H&E slides, showing improved vascular quantification and prognostic value in astrocytoma.

bioRxiv · Mar 19, 2026 · PreprintPathology

Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs

Xuanji Li, Christopher Rensing, Gisle Vestergaard, Manimozhiyan Arumugam, Joseph Nesme, Shashank Gupta, Asker Brejnrod, Søren Johannes Sørensen

The paper analyzes gut metagenomes from pigs to investigate co-occurrence patterns of antibiotic resistance genes (ARGs) with metal and biocide resistance genes, finding non-random phylogenetic associations.

Environment International · Sep 28, 2021Peer-reviewedBioinformatics