Author

Shizhao Yang

Dartmouth College

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Organism:multiple species· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Alexander G. J. Skorput· 1 shared Beth K. Martin· 1 shared Camiel C. A. MannensiD· 1 shared Chengxiang QiuiD· 1 shared Chun-Chieh Lin· 1 shared Cole TrapnelliD· 1 shared Diana R. O’DayiD· 1 shared Fred W KollingiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperImmunology

Alexander G. J. Skorput

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Author profile →

2 papers

Recent·Most cited

Common viral infections seed regionally distinct resident memory T cells in the human CNS

Hanna N. Degefu, Tyler G. Searles, Tiffany Chen, Shawn C. Musial, Jordan Fredriksen Isaacs, Sierra A. Kleist, Shizhao Yang, Myles A. Ford, Fred W Kolling, Mary Jo Turk, Alexander G. J. Skorput, Chun-Chieh Lin, George J. Zanazzi, Jennifer Hong, Li Song, Pamela C. Rosato

The paper identifies regionally distinct CD8+ resident memory T cells in the human CNS shaped by viral infections using single-cell RNA sequencing and T cell receptor analysis.

bioRxiv · Sep 27, 2026 · PreprintImmunology

Evolutionary transfer learning enables organism-wide inference of mammalian enhancer landscapes

Chengxiang Qiu, Riza M. Daza, Ian C. Welsh, Rupali P Patwardhan, Beth K. Martin, Tony W. Li, Shizhao Yang, Camiel C. A. Mannens, Seppe De Winter, Niklas Kempynck, Megan L. Taylor, Olivia Fulton, Truc-Mai Le, Diana R. O’Day, Jean‐Benoît Lalanne, , Jay Shendure

The paper develops STEAM, an evolution-augmented deep learning model, to predict mammalian enhancer landscapes across species using comparative genomics and single-cell data.

bioRxiv · May 27, 2026 · PreprintGenomics