Author

Shradha Amatya

Wellcome Sanger Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Assay:DNA methylation· 1 Research Focus:eQTL / molecular QTL mapping· 1

Frequent Co-Authors

Davis James McCarthyiD· 2 shared Ludovic VallieriD· 2 shared Marc Jan BonderiD· 2 shared Mariya ChhatriwalaiD· 2 shared Oliver StegleiD· 2 shared Abigail IsaacsoniD· 1 shared Alex Alderton· 1 shared Andreas LehaiD· 1 shared

Activity by Year

2019-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Davis James McCarthyORCID

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2 papers

Recent·Most cited

Single-cell RNA-seq of differentiating iPS cells reveals dynamic genetic effects on gene expression

Anna S. E. Cuomo, Daniel D. Seaton, Davis James McCarthy, Iker Martinez, Marc Jan Bonder, José Garcia‐Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew J. Knights, Kedar Nath Natarajan, Chukwuma A. Agu, Alex Alderton, Petr Danecek, , Oliver Stegle

The paper uses single-cell RNA-seq of differentiating iPS cells from 125 donors to identify expression quantitative trait loci influencing gene expression during endoderm differentiation.

Nature Communications · Feb 10, 2020Peer-reviewedGenomics

Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity

Stephanie Maria Linker, Lara Urban, Stephen J. Clark, Mariya Chhatriwala, Shradha Amatya, Davis James McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle, Marc Jan Bonder

The paper uses single-cell profiling of expression and DNA methylation to study splicing regulation and heterogeneity in human induced pluripotent stem cells.

Genome biology · Feb 11, 2019Peer-reviewedBioinformatics