Ingo Ebersberger

fDOG-Assembly identifies orthologs in unannotated genomes, outperforming traditional methods by not relying on pre-annotated proteomes and recovering missed orthologs.

The paper identifies cell-envelope conduits in Acinetobacter baumannii that enable direct transfer of large chromosomal DNA segments between cells.

This paper identifies OEF18 as a membrane-anchored Ca²⁺ sensor in chloroplasts and peroxisomes that links calcium signaling to jasmonate-mediated defense and stress responses in plants.

The paper investigates the impact of miRNA losses in rodents, showing multi-level gene regulation restructuring and evolutionary consequences.

This paper identifies SigAb as a metal stress-responsive ECF σ factor in Acinetobacter baumannii, showing it directly regulates a small set of genes and indirectly controls hundreds involved in metal resistance and fitness.

This study uses CRISPR interference to screen chemical inhibitors against essential genes in A. baumannii, revealing gene-inhibitor interactions and potential drug targets.

The paper introduces fDOG, a novel ortholog search tool, to trace plant cell wall degrading enzymes across 18,000 taxa, revealing invertebrates with rich PCD repertoires and limited functional modifications.

FAS scores protein feature architecture similarity, outperforming existing methods in benchmarking orthology assignment and identifying functionally diverged homologs.

This paper identifies evolutionarily stable gene clusters in Acinetobacter species that reveal genetic features associated with pathogenicity and host interaction.

The paper assembles the holo-genome of the lichen Umbilicaria pustulata using metagenomic data, revealing genome structures and abundance ratios of its symbiotic components.

This study identifies MKRN1 as a key player in ribosome-associated quality control by promoting ribosome stalling at poly(A) sequences to prevent erroneous protein production.

The paper uses single-cell profiling of expression and DNA methylation to study splicing regulation and heterogeneity in human induced pluripotent stem cells.

The paper presents a draft genome of Radix auricularia, a freshwater snail, with high coverage and gene annotation, providing a resource for genomic and population genetic studies.