Author

Sreenivas Ara

Centre for Cellular and Molecular Biology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Divya Tej SowpatiiD· 3 shared Karthik Bharadwaj TallapakaiD· 2 shared Lamuk ZaveriiD· 2 shared Nitesh Kumar SinghiD· 2 shared Onkar KulkarniiD· 2 shared Reuben Jacob MathewiD· 2 shared Ajay GauriD· 1 shared Amitha Sampat Kumar· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Divya Tej SowpatiORCID

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3 papers

Recent·Most cited

Comprehensive benchmarking of tools for nanopore-based detection of DNA methylation

Onkar Kulkarni, Reuben Jacob Mathew, Rhea Jana, Lamuk Zaveri, Sreenivas Ara, Tulasi Nagabandi, Nitesh Kumar Singh, Karthik Bharadwaj Tallapaka, Divya Tej Sowpati

This study benchmarks nanopore-based DNA methylation detection tools across bacterial, plant, and mammalian datasets, finding older models best for CpG methylation and newer tools better for non-CG methylation.

Nature Communications · Jul 15, 2026Peer-reviewedGenomics

NEMO: Improved and accurate models for identification of 6mA using Nanopore sequencing

Onkar Kulkarni, Lamuk Zaveri, Reuben Jacob Mathew, Nitesh Kumar Singh, Sreenivas Ara, Shambhavi Garde, Manjula Reddy, Karthik Bharadwaj Tallapaka, Divya Tej Sowpati

The paper develops improved models for detecting 6mA using Nanopore sequencing, achieving higher accuracy than existing methods.

bioRxiv · Mar 12, 2024 · PreprintGenomics

De novo assembly and annotation of Asiatic lion (Panthera leo persica) genome

Siuli Mitra, Sreenivas Ara, Divya Tej Sowpati, Amitha Sampat Kumar, Gowri Awasthi, Madan Kumar, Wajeeda Tabusum, Ajay Gaur

The paper presents the first draft genome assembly of an Asiatic lion and reports its genetic diversity, evolutionary history, and gene family expansions.

bioRxiv · Feb 14, 2019 · PreprintGenomics