Author

Timo Ahola

Tampere University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Jan KasliniD· 2 shared Minna‐Liisa ÄnköiD· 2 shared Mohamed N. M. BahrudeeniD· 2 shared Alexander EFIMOV· 1 shared Donald WłodkowiciD· 1 shared Fionna E. LoughliniD· 1 shared Katrina Woodward· 1 shared Madara RatnadiwakaraiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersMolecular Biology

Jan KaslinORCID

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2 papers

Recent·Most cited

Profiling of HeLa nucleoplasmic and nucleolar RNAs by Halo-seq proximity labeling

Timo Ahola, Piia Takabe, Riku Salomäki, Päivi Lillsunde, Mohamed N. M. Bahrudeen, Donald Włodkowic, Jan Kaslin, Alexander EFIMOV, Minna‐Liisa Änkö

The paper presents an optimized Halo-seq protocol to profile nucleoplasmic and nucleolar RNAs in HeLa cells, demonstrating high spatial specificity.

bioRxiv · Jan 30, 2026 · PreprintMolecular Biology

dirCLIP profiles variant-specific RNA-protein interactions via nanopore long-read sequencing

Mohamed N. M. Bahrudeen, Mauro Scaravilli, Zileena Zahir, Katrina Woodward, Timo Ahola, Madara Ratnadiwakara, Jan Kaslin, Fionna E. Loughlin, Nikolay E. Shirokikh, Minna‐Liisa Änkö

dirCLIP uses nanopore sequencing to profile variant-specific RNA-protein interactions, revealing isoform-selective binding and co-occurring sites with high concordance to short-read data.

bioRxiv · Jan 22, 2026 · PreprintMolecular Biology