Author

Katrina Woodward

Australian National University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Minna‐Liisa ÄnköiD· 2 shared Nikolay E. ShirokikhiD· 2 shared A.J. SethiiD· 1 shared Agin RavindraniD· 1 shared Alice CleyneniD· 1 shared B. R. Prashantha KumariD· 1 shared Eduardo EyrasiD· 1 shared Fionna E. LoughliniD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersMolecular Biology

Minna‐Liisa ÄnköORCID

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2 papers

Recent·Most cited

dirCLIP profiles variant-specific RNA-protein interactions via nanopore long-read sequencing

Mohamed N. M. Bahrudeen, Mauro Scaravilli, Zileena Zahir, Katrina Woodward, Timo Ahola, Madara Ratnadiwakara, Jan Kaslin, Fionna E. Loughlin, Nikolay E. Shirokikh, Minna‐Liisa Änkö

dirCLIP uses nanopore sequencing to profile variant-specific RNA-protein interactions, revealing isoform-selective binding and co-occurring sites with high concordance to short-read data.

bioRxiv · Jan 22, 2026 · PreprintMolecular Biology

High-Accuracy RNA Integrity Definition for Unbiased Transcriptome Comparisons with INDEGRA

Alice Cleynen, Agin Ravindran, A.J. Sethi, B. R. Prashantha Kumar, Tanya Javaid, Shafi Mahmud, Katrina Woodward, Helaine Graziele Santos Vieira, Minna‐Liisa Änkö, Robert J. Weatheritt, Eduardo Eyras, Stephane S. Robin, Nikolay E. Shirokikh

The paper introduces DTI, a new RNA integrity metric based on nanopore sequencing, and the INDEGRA package to correct biases and enable accurate transcriptome comparisons.

bioRxiv · Dec 12, 2024 · PreprintBioinformatics