Minna‐Liisa Änkö

segSHAPE: RNA secondary structure prediction from nanopore direct RNA sequencing

segSHAPE improves RNA secondary structure prediction from Nanopore DRS data by enhancing signal alignment and modification rate estimation, achieving higher accuracy than existing methods.

Profiling of HeLa nucleoplasmic and nucleolar RNAs by Halo-seq proximity labeling

The paper presents an optimized Halo-seq protocol to profile nucleoplasmic and nucleolar RNAs in HeLa cells, demonstrating high spatial specificity.

dirCLIP profiles variant-specific RNA-protein interactions via nanopore long-read sequencing

dirCLIP uses nanopore sequencing to profile variant-specific RNA-protein interactions, revealing isoform-selective binding and co-occurring sites with high concordance to short-read data.

High-Accuracy RNA Integrity Definition for Unbiased Transcriptome Comparisons with INDEGRA

The paper introduces DTI, a new RNA integrity metric based on nanopore sequencing, and the INDEGRA package to correct biases and enable accurate transcriptome comparisons.

Early migration of precursor neurons initiates cellular and functional regeneration after spinal cord injury in zebrafish.

This study identifies two phases of cellular regeneration after spinal cord injury in zebrafish, highlighting the role of precursor neuron migration in initiating functional recovery.