Author

Tumor Profiler Consortium

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 3

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:clustering· 2 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Assay:scRNA-seq· 2 Research Focus:variant calling· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. Dondi· 2 shared F. Jacob· 2 shared N. Beerenwinkel· 2 shared V. Heinzelmann-Schwarz· 2 shared A. Jacobs· 1 shared B. Bodenmiller· 1 shared B. J. Haas· 1 shared C. Beisel· 1 shared

Activity by Year

2022-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersCancer Biology

A. Dondi

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3 papers

Recent·Most cited

De novo detection of somatic variants in high-quality long-read single-cell RNA sequencing data

A. Dondi, N. Borgsmüller, P. F. Ferreira, B. J. Haas, F. Jacob, V. Heinzelmann-Schwarz, Tumor Profiler Consortium, N. Beerenwinkel

LongSom detects somatic variants in LR scRNA-seq data without normal samples, revealing clonal heterogeneity in ovarian cancer.

bioRxiv · Mar 6, 2024Cancer Biology

Standardization of suspension and imaging mass cytometry readouts for clinical decision making

R. Casanova, S. Xu, S. Sivapatham, A. Jacobs, S. Engler, Tumor Profiler Consortium, M. P. Levesque, R. Dummer, B. Bodenmiller, S. Chevrier

This study standardizes suspension and imaging mass cytometry measurements to improve clinical reproducibility and provide oncologists with tumor biology insights.

bioRxiv · Mar 19, 2023 · PreprintCancer Biology

Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer

A. Dondi, U. Lischetti, F. Jacob, F. Singer, N. Borgsmueller, R. Coelho, Tumor Profiler Consortium, V. Heinzelmann-Schwarz, C. Beisel, N. Beerenwinkel

This study uses long-read single-cell RNA sequencing to detect isoforms and genomic alterations in ovarian cancer, revealing novel isoforms, cell type-specific expression patterns, and gene fusions.

bioRxiv · Dec 12, 2022Cancer Biology