U. Pandey

Comparative Analysis of Multiple Consensus Genomes of the Same Strain of Marek's Disease Virus Reveals Intrastrain Variation

This study compares multiple consensus genomes of the same Marek's Disease Virus strain, revealing intrastrain variation and highlighting the need for multiple genomes to improve interstrain comparisons.

DeePNAP: A deep learning method to predict protein-nucleic acids binding affinity from sequence

DeePNAP predicts protein-nucleic acid binding affinity and mutation effects from sequence alone, achieving high accuracy using a large heterogeneous dataset.

Treatment with commonly used antiretroviral drugs induces a type I/III interferon signature in the gut in the absence of HIV infection

This study shows that oral TDF/FTC antiretroviral drugs induce a type I/III interferon signature in the gut without HIV infection, potentially affecting immune responses.

Comparative metagenomic analysis following treatment with vancomycin in C57BL/6 and BALB/c mice to elucidate host immunity and behavior

This study compares metagenomic changes in Th1 and Th2 biased mice after vancomycin treatment, showing microbiota restoration and associated physiological and behavioral recovery.

Comparative analysis of beneficial effects of Vancomycin treatment on Th1- and Th2-biased mice and role of gut microbiota

This study examines how vancomycin affects gut microbiota and immune profiles in Th1- and Th2-biased mice, finding that continued vancomycin treatment benefits Th1 mice more by reducing pathogens and increasing beneficial microbes.

Genotypic and phenotypic diversity within the neonatal HSV-2 population

This study analyzes HSV-2 isolates from neonates with different clinical outcomes, finding genomic diversity and associations between viral variants and invasive disease.