Author

V. Velasco-Berrelleza

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:E. coli· 1

Frequent Co-Authors

A. Noy· 3 shared M. C. Leake· 2 shared A. D. Bates· 1 shared A. L. B. Pyne· 1 shared A. Maxwell· 1 shared B. W. Hoogenboom· 1 shared C. E. M. Stevenson· 1 shared F. M. Cugliandolo· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersBiophysics

A. Noy

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides

A. L. B. Pyne, A. Noy, K. Main, V. Velasco-Berrelleza, M. M. Piperakis, L. A. Mitchenhall, F. M. Cugliandolo, J. G. Beton, C. E. M. Stevenson, B. W. Hoogenboom, A. D. Bates, A. Maxwell, S. A. Harris

This study uses AFM and MD simulations to analyze how DNA supercoiling affects structure and triplex-forming oligonucleotide binding at base-pair resolution.

bioRxiv · Jan 7, 2021Biophysics

Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity

S. Yoshua, G. Watson, J. Howard, V. Velasco-Berrelleza, M. C. Leake, A. Noy

The paper shows IHF binds DNA in three distinct modes with varying specificity, enabling DNA compaction and structural organization.

bioRxiv · Apr 17, 2020 · PreprintBiophysics

SerraNA: a program to determine nucleic acids elasticity from simulation data

V. Velasco-Berrelleza, M. Burman, J. W. Shepherd, M. C. Leake, R. Golestanian, A. Noy

SerraNA calculates elastic parameters of nucleic acids from simulation data, revealing sequence-dependent elasticity and global bendability from local bending angles.

Physical Chemistry Chemical Physics · Jan 1, 2020Peer-reviewedBiophysics