Author

Weiling Zhao

The University of Texas Health Science Center at Houston

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 5 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:clustering· 1

Frequent Co-Authors

Xiaobo ZhouiD· 6 shared Mengyuan YangiD· 2 shared Pora KimiD· 2 shared Yungang XuiD· 2 shared Zhiwei JiiD· 2 shared Changan LiuiD· 1 shared Claudio A. SotoiD· 1 shared Dazhi Shang· 1 shared

Activity by Year

2017-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

6 shared papersBioinformatics

Xiaobo ZhouORCID

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Radiogenomics-based Risk Prediction of Glioblastoma Multiforme with Clinical Relevance

Xiaohua Qian, Hua Tan, Xiaona Liu, Weiling Zhao, Michael David Chan, Pora Kim, Xiaobo Zhou

This study develops a 2YS logistic regression model using radiogenomics analysis to predict GBM patient survival based on MRI features and gene associations.

Genes · Jun 1, 2024Peer-reviewedBioinformatics

CCPE: Cell Cycle Pseudotime Estimation for Single Cell RNA-seq Data

Jiajia Liu, Mengyuan Yang, Weiling Zhao, Xiaobo Zhou

CCPE estimates cell cycle pseudotime and identifies cell cycle phases from scRNA-seq data, showing effectiveness and robustness in simulated and real datasets.

Nucleic Acids Research · Dec 15, 2021Peer-reviewedBioinformatics

Systematically understanding the key roles of microglia in AD development

Zhiwei Ji, Changan Liu, Weiling Zhao, Claudio A. Soto, Xiaobo Zhou

This study develops a 3D multi-scale model of AD to understand microglia's role in disease progression and predict therapeutic strategies.

Computers in Biology and Medicine · Apr 5, 2021Peer-reviewedSystems Biology

A novel bioinformatics approach to reveal the role of circadian oscillations in AD development

Zhiwei Ji, Dazhi Shang, Pora Kim, Mengyuan Yang, Sijia Wu, Weiling Zhao, Eunju Kim, Marvin Wirianto, Zheng Chen, Seung Hee Yoo, Xiaobo Zhou

This study introduces ESOCVD, a computational platform to detect circadian gene expression patterns in AD using untimed transcriptome data, revealing five circadian alteration patterns in AD patients.

bioRxiv · Jul 16, 2020 · PreprintBioinformatics

Alternative splicing links histone modifications to stem cell fate decision

Yungang Xu, Weiling Zhao, Scott D. Olson, Karthik S. Prabhakara, Xiaobo Zhou

The paper identifies histone modifications associated with alternative splicing events in human ESCs and shows their role in cell cycle regulation and fate decision.

Genome biology · Sep 14, 2018Peer-reviewedBioinformatics

Deep learning of the splicing (epi)genetic code reveals a novel candidate mechanism linking histone modifications to ESC fate decision

Yungang Xu, Yongcui Wang, Jiesi Luo, Weiling Zhao, Xiaobo Zhou

The paper introduces DeepCode, a deep learning model that integrates epigenetic features to predict splicing patterns during hESC differentiation and identifies a novel mechanism linking histone modifications to cell fate decisions.

Nucleic Acids Research · Sep 15, 2017Peer-reviewedBioinformatics