Author

William James Kent

University of California, Santa Cruz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 3 Approach:experimental assay· 3 Assay:ChIP-seq· 2 Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Maximilian HaeussleriD· 3 shared Brian J. RaneyiD· 2 shared Brian T. LeeiD· 2 shared David H. HaussleriD· 2 shared Hiram ClawsoniD· 2 shared Jason D. FernandesiD· 2 shared Alastair Charles Fyfe· 1 shared Alex A. PolleniD· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersGenomics

Maximilian HaeusslerORCID

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Author profile →

4 papers

Recent·Most cited

The ENCODE Uniform Analysis Pipelines

Benjamin C. Hitz, Jin-Wook Lee, Otto Jolanki, Meenakshi S. Kagda, Keenan Graham, Paul Sud, Idan Gabdank, J. Seth Strattan, Cricket Alicia Sloan, Timothy R. Dreszer, Laurence D. Rowe, Nikhil R. Podduturi, Venkat S. Malladi, Esther T. Chan, Jean M. Davidson, , J. Michael Cherry

ENCODE's containerised Workflow Description Language pipelines for ChIP-seq, ATAC-seq, DNase-seq, RNA-seq variants, Hi-C and bisulfite sequencing run on cloud or local clusters, with documented compute costs and provenance.

bioRxiv · Apr 4, 2023 · PreprintBioinformatics✦ In-depth digest

UCSC Cell Browser: Visualize Your Single-Cell Data

Matthew L Speir, Aparna Bhaduri, Nikolay S. Markov, Pablo A Moreno, Tomasz Jan Nowakowski, Irene Papatheodorou, Alex A. Pollen, Brian J. Raney, Lucas Seninge, William James Kent, Maximilian Haeussler

The UCSC Cell Browser allows visualization of gene expression and metadata in single-cell datasets through a web interface and Python package.

Bioinformatics · Jul 5, 2021Peer-reviewedBioinformatics

The UCSC SARS-CoV-2 Genome Browser

Jason D. Fernandes, Angie S. Hinrichs, Hiram Clawson, Jairo Navarro Gonzalez, Brian T. Lee, Luis R Nassar, Brian J. Raney, Kate R. Rosenbloom, Santrupti Nerli, Arjun Arkal Rao, Daniel Schmelter, Alastair Charles Fyfe, Nathan D Maulding, Ann S. Zweig, Todd M. Lowe, , Maximilian Haeussler

The paper describes a SARS-CoV-2 genome browser that integrates molecular data from multiple sources for visualization and analysis.

Nature Genetics · Sep 9, 2020Peer-reviewedGenomics

The UCSC Repeat Browser allows discovery and visualization of evolutionary conflict across repeat families

Jason D. Fernandes, Armando Zamudio-Hurtado, Hiram Clawson, William James Kent, David H. Haussler, Sofie R. Salama, Maximilian Haeussler

The UCSC Repeat Browser provides a tool for visualizing and analyzing repeat elements in the genome, enabling the study of evolutionary conflicts across species.

Mobile DNA · Mar 31, 2020Peer-reviewedGenomics