Brian J. Raney

The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution

The paper introduces a genome browser track for visualizing dynamic DNA sequence features at single nucleotide resolution using machine learning-derived scores.

UCSC Cell Browser: Visualize Your Single-Cell Data

The UCSC Cell Browser allows visualization of gene expression and metadata in single-cell datasets through a web interface and Python package.

The UCSC SARS-CoV-2 Genome Browser

The paper describes a SARS-CoV-2 genome browser that integrates molecular data from multiple sources for visualization and analysis.

Chromosome assembly of large and complex genomes using multiple references

The paper introduces Ragout, a reference-assisted assembly tool that improves chromosome assembly for large and complex genomes, achieving high accuracy with less than 5% unlocalized sequence.

The UCSC Genome Browser database: 2016 update

The paper updates the UCSC Genome Browser with new features and data sets, including improved human genome assembly hg38/GRCh38 and new tools for data integration.