Author

Xiaoshu Ma

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:variant calling· 3 Assay:long-read sequencing· 2 Approach:statistical model· 1 Assay:whole-genome sequencing· 1 Organism:yeast· 1

Frequent Co-Authors

Ruikai Jia· 3 shared Yusha WangiD· 3 shared Hua YeiD· 2 shared lei yangiD· 2 shared Hua Ye· 1 shared Hua YeiD· 1 shared

Activity by Year

2024-2024 · peak 4/yr

Co-Author Collaboration Network

6 top collaborators · 10 mutual co-author links

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3 shared papersMolecular Biology

Ruikai Jia

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Author profile →

4 papers

Recent·Most cited

Cas9AEY (Cas9-facilitated Homologous Recombination Assembly of non-specific Escherichia coli yeast vector) method of constructing large-sized DNA.

xiaoshu ma, lei yang, Hua Ye

The paper describes a method to construct large DNA plasmids using yeast homologous recombination and CRISPR-Cas9 to remove a yeast replication element.

bioRxiv · Sep 17, 2024 · PreprintSynthetic Biology

A method for filtering abnormal modified base calling in Oxford Nanopore Technologies sequencing

Ruikai Jia, Yusha Wang, Hua Ye, Xiaoshu Ma

The paper introduces a method to filter abnormal modified base calling in Oxford Nanopore Technologies sequencing, improving accuracy and reducing the need for secondary sequencing.

Journal of Bioinformatics and Systems Biology · Jan 1, 2024Peer-reviewedBioinformatics

Direct Pacbio sequencing methods and applications for different types of DNA sequences

Yusha Wang, Xiaoshu Ma, Lei Yang, Hua Ye, Ruikai Jia

This study evaluates PacBio sequencing for direct, full-length resolution of complex DNA sequences, finding it effective for high GC, poly, and repeat sequences like rAAV without pre-fragmentation.

Archives of Microbiology & Immunology · Jan 1, 2024Peer-reviewedMolecular Biology

A new method and application of PacBio sequencing for low copy and difficulty preparation plasmids.

Xiaoshu Ma, Yusha Wang, Ruikai Jia, Hua Ye

This paper presents a method to improve PacBio sequencing of low-copy plasmids using Phi29 polymerase amplification and a plasmid-free sequencing approach.

Journal of Bioinformatics and Systems Biology · Jan 1, 2024Peer-reviewedMolecular Biology