Author

Y. T. Kim

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

K. J. Na· 2 shared A. J. Schulte· 1 shared A. L. Sarver· 1 shared C. L. Foster· 1 shared E. K. Karlsson· 1 shared H. Choi· 1 shared I. Elvers· 1 shared J. Cho· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

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2 shared papersCancer Biology

K. J. Na

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Author profile →

3 papers

Recent·Most cited

Mapping cell types in the tumor microenvironment from tissue images via deep learning trained by spatial transcriptomics of lung adenocarcinoma

K. J. Na, J. Koh, H. Choi, Y. T. Kim

The paper develops a deep learning method to map cell types in lung adenocarcinoma tumor microenvironments using H&E images trained on spatial transcriptomic data.

bioRxiv · Mar 4, 2023 · PreprintCancer Biology

Relative infectivity of the SARS-CoV-2 Omicron variant in human alveolar cells

T. Kim, K. I. Min, J.-S. Yang, J. W. Kim, J. Cho, Y. H. Kim, J. S. Lee, Y. T. Kim, K.-C. Kim, J. Y. Kim, K. J. Na, J.-Y. Lee, Y. S. Ju

This study compares the infectivity of SARS-CoV-2 variants in human alveolar cells, finding Omicron (BA.1) to be 3-5-fold more infectious than other variants at early infection.

bioRxiv · Apr 13, 2022Microbiology

Genomically Complex Human Angiosarcoma and Canine Hemangiosarcoma Establish Convergent Angiogenic Transcriptional Programs Driven by Novel Gene Fusions

J. H. Kim, K. J. Megquier, R. Thomas, A. L. Sarver, J. M. Song, Y. T. Kim, A. J. Schulte, N. Cheng, M. A. Linden, P. Murugan, L. Oseth, C. L. Foster, I. Elvers, R. Swofford, J. Turner-Maier, , J. F. Modiano

This study identifies novel fusion genes in human angiosarcomas and canine hemangiosarcomas, showing convergent transcriptional programs driven by these fusions and mutations in TP53 and PI3K/AKT/mTOR pathway genes.

bioRxiv · Aug 11, 2020Cancer Biology