Author

Yarden Katz

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Neuroscience· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Research Focus:differential expression· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:clustering· 1

Frequent Co-Authors

Christopher B Burge· 2 shared Edoardo M Airoldi· 2 shared Albert W Cheng· 1 shared Bang Wong· 1 shared Carlos LoisiD· 1 shared Christopher B. Burge· 1 shared Christopher J Lengner· 1 shared Eric T Wang· 1 shared

Activity by Year

2014-2016 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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2 shared papersGenomics

Christopher B Burge

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Author profile →

4 papers

Recent·Most cited

Probabilistic adaptation in changing microbial environments

Yarden Katz, Michael Springer

The paper develops a dynamic Bayesian model for microbial growth in structured changing environments and shows that particle filtering outperforms heuristic strategies for real-time adaptation.

bioRxiv · Jul 22, 2016Systems Biology

Rapid transcriptional response to physiological neuronal activity in vivo revealed by transcriptome sequencing

Yarden Katz, Tarciso Velho, Vincent Butty, Christopher B. Burge, Carlos Lois

The paper investigates rapid transcriptional and post-transcriptional changes in neuronal activity in vivo using RNA-Seq, finding rapid transcriptional responses but no global changes in alternative splicing.

bioRxiv · Jun 26, 2014 · PreprintNeuroscience

Musashi proteins are post-transcriptional regulators of the epithelial-luminal cell state

Yarden Katz, Feifei Li, Nicole Lambert, Ethan M Sokol, Wai-Leong Tam, Albert W Cheng, Edoardo M Airoldi, Christopher J Lengner, Piyush B Gupta, Zhengquan Yu, Rudolf Jaenisch, Christopher B Burge

This study identifies Musashi proteins as regulators of the epithelial-luminal cell state by repressing EMT and promoting epithelial gene expression in neural and breast cells.

bioRxiv · Jun 12, 2014Genomics

Sashimi plots: Quantitative visualization of alternative isoform expression from RNA-seq data

Yarden Katz, Eric T Wang, Jacob Stilterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T Robinson, Jill P Mesirov, Edoardo M Airoldi, Christopher B Burge

The paper introduces Sashimi plots as a method to visualize and compare isoform expression across multiple RNA-Seq samples.

bioRxiv · Feb 11, 2014Bioinformatics