Author

Youngjae Choe

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1 Assay:organoid / primary culture· 1 Approach:statistical model· 1

Frequent Co-Authors

Akiko Shimamura· 1 shared Alexander MacDonald· 1 shared Amanda Jiang· 1 shared Arianna Rech· 1 shared Bo-Ra Hyun· 1 shared Cailin E. Joyce· 1 shared Carl D. Novina· 1 shared Carlos F. Ng· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBioengineering

Akiko Shimamura

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2 papers

Recent·Most cited

Telomere-to-telomere, accurate, and gapless genome assembly (TTAGGA) of the Korean Jindo dog with a single-contig Y chromosome

H. Alex Choi, Jongseok Kim, Yoonsung Kwon, Sangsoo Park, Sungwon Jeon, Jihun Bhak, Donghyun Shin, Yookyung Choi, Kyungwhan An, Doug-Young Ryu, Woon Kee Paek, Daeui Park, Jaemin Kim, Mikkel-Holger S. Sinding, Youngjae Choe, , Jong Bhak

The paper presents a gapless, haplotype-resolved canine genome assembly for a Jindo dog, achieving high completeness and accuracy for the Y chromosome.

bioRxiv · May 20, 2026 · PreprintGenomics

Human bone marrow disorders recapitulated in vitro using organ chip technology

David B. Chou, Viktoras Frismantas, Yuka Milton, Rhiannon David, Petar Pop-Damkov, Douglas Ferguson, Alexander MacDonald, Özge Vargel Bölükbaşı, Cailin E. Joyce, Liliana S. Moreira Teixeira, Arianna Rech, Amanda Jiang, Elizabeth Calamari, Sasan Jalili-Firoozinezhad, Carlos F. Ng, , Donald E. Ingber

The paper describes a Bone Marrow-on-a-Chip model that mimics bone marrow function and disease states, including drug and radiation responses and Shwachman-Diamond Syndrome abnormalities.

bioRxiv · Nov 1, 2018 · PreprintBioengineering