Author

Yuan Xu

Baylor College of Medicine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Biochemistry· 1 Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Abhinav K. JainiD· 1 shared Ao CheniD· 1 shared Chengjia Li· 1 shared Chikashi C. TeraoiD· 1 shared Courtney ChambersiD· 1 shared Dingyang LiiD· 1 shared Dongsheng Ran· 1 shared Eric A. SmithiD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperSystems Biology

Abhinav K. JainORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

ST-FFPE-mIF: Integrating Spatial Transcriptomics and Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tissues Using Stereo-seq

Xue Zhang, Meng Zhang, Yuan Xu, Yangyang Song, Xinfeng Yang, Yanan Wu, Xuelin Zhao, Dongsheng Ran, Xin Liu, Huaqiang Huang, Wenxiao Lei, Hongyan Li, Yongfen Zhang, Xi Feng, Guibo Li, , Jiajun Zhang

The paper introduces a protocol to integrate spatial transcriptomics and multiplex immunofluorescence in FFPE tissues, enabling multi-omic analysis at single-cell resolution in colorectal cancer samples.

Genome biology · Dec 16, 2025Peer-reviewedBiochemistry

Imputation Disparities Driven by Recent Selectionand Their Impact on Disease Risk Estimation in East and Southeast Asian Populations

Dingyang Li, Pattarin Tangtanatakul, Lei Yao, Xiaoxi Liu, Hsi‐Yuan Huang, Yang-Chi-Dung Lin, Chengjia Li, Yidan Chen, Lizhi Cai, Jinglu Zhao, Prapaporn Pisitkun, Thanitta Suangtamai, Jinhan Yu, Yihang Zhou, Yuan Xu, , Yongfei Wang

The paper evaluates imputation performance in East and Southeast Asian populations, showing that recent selection affects variant detection and polygenic risk score estimation.

Communications Biology · Nov 21, 2025Peer-reviewedGenomics

SMARCA4 regulates spatially restricted metabolic plasticity in 3D multicellular tissue

Kateřina Čermáková, Eric A. Smith, Yuen San Chan, Mario Loeza Cabrera, Courtney Chambers, Maria Jarvis, Lukas Mikolaj Simon, Yuan Xu, Abhinav K. Jain, Nagireddy Putluri, Rui Chen, Robert Taylor Ripley, Omid Veiseh A, H. Courtney Hodges

This study shows that SMARCA4 regulates spatially restricted metabolic changes in 3D multicellular tissues by altering DNA accessibility and gene expression.

bioRxiv · Mar 21, 2021 · PreprintSystems Biology