Author

Yuliya Farris

Pacific Northwest National Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Ecology· 1 Microbiology· 1 Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Organism:bacteria (other)· 2 Research Focus:differential expression· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:E. coli· 1

Frequent Co-Authors

Josué A. Rodríguez-RamosiD· 2 shared Aishwarya S. DeshpandeiD· 1 shared Alan J. WolfeiD· 1 shared Andrew P. TownsendiD· 1 shared Anna TurețcaiaiD· 1 shared Caroline SimonseniD· 1 shared Christian Ayala-OrtiziD· 1 shared Christopher T. FilstrupiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersEcology

Josué A. Rodríguez-RamosORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Phytoplankton Dynamics and Urbanization Gradients Reshape Dissolved Organic Matter and Microbial Networks across a Freshwater Estuary

Christian Ayala-Ortiz, Peter A. Birschbach, Josué A. Rodríguez-Ramos, William Petersen, Caroline Simonsen, Andrew P. Townsend, Izabel L. Stohel, Yuliya Farris, Aishwarya S. Deshpande, Anna Turețcaia, Thomas W O Wietsma, William Kew, Rosalie Chu, Euan D. Reavie, Christopher T. Filstrup, , Emily B. Graham

The paper examines how urbanization affects dissolved organic matter and microbial networks in a freshwater estuary by analyzing seasonal and spatial gradients.

bioRxiv · Oct 28, 2026 · PreprintEcology

Environmental matrix and moisture are key determinants of microbial phenotypes expressed in a reduced complexity soil-analog

Josué A. Rodríguez-Ramos, Natalie Sadler, Elias K. Zegeye, Yuliya Farris, Samuel Owen Purvine, Sneha Couvillion, William C. Nelson, Kirsten Hofmockel

The paper investigates how soil moisture and structure affect microbial phenotypes in a simplified soil analog system, revealing key roles of chitin-degrading bacteria and stress responses in carbon use efficiency.

mSystems · Feb 24, 2025Peer-reviewedMicrobiology

Regulation of bacterial stringent response by an evolutionary conserved ribosomal protein L11 methylation

Hanna E. Walukiewicz, Yuliya Farris, Meagan Burnet, Sarah C. Feid, Youngki You, David G. Christensen, Samuel H. Payne, Alan J. Wolfe, Christopher V. Rao, Ernesto Satoshi Nakayasu

The paper identifies conserved bacterial protein methylation, showing ribosomal protein L11 methylation regulates stringent response signaling and ribosomal homeostasis.

bioRxiv · Jun 29, 2023 · PreprintSystems Biology

A broad-host-range event detector: expanding and quantifying performance across bacterial species

Nymul E. Khan, Enoch Yeung, Yuliya Farris, Sarah J Fansler, Hans Christopher Bernstein

This study evaluates a chemical event logger's performance across different bacterial species, finding that Pseudomonads outperform E. coli in some aspects.

Synthetic Biology · Jan 1, 2020Peer-reviewedSynthetic Biology