Author

Yuxin Zhang

Beijing Institute of Technology

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Developmental Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Bin Jiang· 1 shared Brandon Reyes-ChaveziD· 1 shared Chang Wang· 1 shared Chenming XuiD· 1 shared Christine Xin Yan Wu· 1 shared Chuan FuiD· 1 shared Chunyan XuiD· 1 shared Congjian XuiD· 1 shared

Activity by Year

2026-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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1 shared paperDevelopmental Biology

Bin Jiang

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3 papers

Recent·Most cited

High-throughput functional genomics and transcriptomics reveal molecular mechanisms regulating the synergistic fungicidal activity of copper and zinc

Joshua D. Kerkaert, Renato Carvalho, Ruby E. Schnirman, Christine Xin Yan Wu, Brandon Reyes-Chavez, Yuxin Zhang, Margaret K. A. Koker, Louisa Smieska, Lori B. Huberman

The paper identifies genes involved in the fungal response to a copper-zinc fungicide using high-throughput screens and transcriptomics, showing limited overlap between the two methods.

bioRxiv · Oct 5, 2026 · PreprintMicrobiology

CatIF-RL: Activity-Oriented Enzyme Sequence Design by Steered Inverse Protein Folding

Yanheng Li, Jialong Xiong, Yuxin Zhang, Tong Cai, Chuan Fu, Shutong Li, Wei Xu, Ruoyi Lyu, Zhaoyang Chen, Zheng Guo, Xinqi Gong, Feng Wang

CatIF-RL designs enzyme variants with enhanced catalytic activity by steering an inverse folding model using predicted kcat as an optimization objective.

Journal of Chemical Information and Modeling · Jul 17, 2026Peer-reviewedBioinformatics

Spatiotemporal transcriptome atlas of human embryos after gastrulation

Jiexue Pan, Yuejiao Li, Zhongliang Lin, Qing Lan, Ying Zhang, Huixi Chen, Shengwei Sui, Man Zhai, Gaochen Zhang, Yi Cheng, Yunhui Tang, Qingchen Wang, Yue Xu, Guoling Li, Chunyan Xu, , Hefeng Huang

The paper creates a spatiotemporal transcriptome atlas of human embryos after gastrulation, revealing organ-specific regulons and regulatory networks during development.

Nature · May 27, 2026Peer-reviewedDevelopmental Biology