Author

Zhiyuan Cheng

Chinese Academy of Sciences

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Biology Disciplines

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Bioinformatics· 2 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:protein structure prediction· 2 Assay:proteomics· 2 Research Focus:benchmarking· 1 Research Focus:deconvolution· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Approach:experimental assay· 1

Frequent Co-Authors

Ben WangiD· 1 shared Chaoyin SheiD· 1 shared Chunyan LiuiD· 1 shared Fulu Chen· 1 shared Guolong Yu· 1 shared Haifeng Chen· 1 shared Hongwei Zhao· 1 shared Hongwen ZhuiD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Ben WangORCID

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3 papers

Recent·Most cited

BioinformaticsAdvanced SciencePeer-reviewedMay 27, 2026

PhosSight: a Unified Deep Learning Framework Boosting and Accelerating Phosphoproteome Identification to Enable Biological Discoveries

Ben Wang, Zhiyuan Cheng, Chaoyin She…·Xinpei Yi

PhosSight improves phosphoproteome identification by addressing acquisition biases in DDA and DIA, enhancing sensitivity and reducing missing values in cancer research.

DOI 10.1002/advs.75856

humanproteomics

BioinformaticsbioRxivPreprintMay 24, 2025

Deconvolution of multiplexed peptidoform mass spectra enables high-resolution profiling of complex protein modification patterns

Zhiyuan Cheng, Linhui Zhai, Li Yu…·Yan Hong Huang Fu

The paper introduces PTMdecoder, a tool for deconvoluting multiplexed mass spectra to identify and quantify isobaric modification peptidoforms with high sensitivity and accuracy.

DOI 10.1101/2025.05.24.655917

humanproteomics

Plant BiologybioRxivPreprintOct 7, 2018

FT/FD-GRF5 repression loop directs growth to increase soybean yield

Kun Xu, Xiao-Mei Zhang, Guolong Yu…·Yong-Fu Fu

The paper identifies a repression feedback loop between GmFTL/GmFDL and GmGRF5-1 that regulates vegetative and reproductive growth in soybean, leading to increased yield.

DOI 10.1101/437053

plant (other)experimental assay