Andrew Ian Webb

MD 2.0 is a web-based platform for quantitative proteomics data analysis that enables modular, customizable workflows to accelerate insight generation and collaboration.

This paper introduces a de novo feature detector, 3DID, for analyzing timsTOF Pro data, which identifies more peptide features across a broader abundance range than existing tools.

The paper introduces four algorithms to improve peptide identification in mass spectrometry data by reducing mass error, enhancing dynamic range, and increasing identification confidence on the Bruker timsTOF Pro.

The paper introduces an embedding-based method for peptide identity propagation that improves missing value reduction and false discovery rate estimation in mass spectrometry data.

Mass Dynamics 1.0 provides a web-based platform for analyzing, visualizing, and sharing label-free proteomics data with automated processing and collaboration features.

This study demonstrates that MLKL ubiquitylation, triggered by oligomerization, regulates necroptosis by modulating MLKL activity and turnover.

The paper introduces msImpute, a low-rank approximation method for imputing missing values in mass spectrometry data, showing it performs well when data are missing at random.

MSCypher improves proteomics analysis by integrating database searching with machine learning to enhance identification rates and handle multiplexed spectra.