Author
RIKEN Center for Biosystems Dynamics ResearchORCID 0000-0001-5224-3811Unclaimed ORCID profile · follow to get notified of new preprints
5 papers
Recent·Most cited
Taro Ichimura, Taishi Kakizuka, Yasuhito Taniguchi…·Takeharu Nagai
The paper introduces a high-resolution volumetric imaging system for observing cellular dynamics in large 3D tissues and embryos, demonstrating its application in mouse brain and quail embryo studies.
Towako Hiraki‐Kajiyama, Nobuhiko Miyasaka, Reiko Ando…·Yoshihiro Yoshihara
The paper creates an atlas and database of neuropeptide gene expression in the adult zebrafish forebrain, identifying novel subnuclei and comparing them to mouse hypothalamic regions.
Soya Shinkai, Hiroya Itoga, Koji Kyoda, Shuichi Onami
PHi-C2 converts Hi-C data into dynamic 3D genome models using polymer modeling and provides an optimized algorithm and Colab workflow for analysis.
Koji Kyoda, Hatsumi Okada, Hiroya Itoga, Shuichi Onami
The paper creates a deep collection of quantitative nuclear division dynamics data from RNAi-treated C. elegans embryos, identifies 8660 reproducible RNAi phenotypes, and suggests 24 functional processes in early embryogenesis.
Koji Kyoda, Kenneth H. L. Ho, Yukako Tohsato…·Shuichi Onami
BD5 is a new HDF5-based data format for biological dynamics data that allows fast random access, improving data reuse compared to XML-based BDML.