Maëlle Daunesse

This study analyzes NK cell receptor gene families in 41 mammals to test if menstruation evolution correlates with receptor repertoire changes, finding intensified purifying selection but no overall diversity shifts.

This study shows that genetic background and environmental factors determine the trajectory of cancer evolution in mice, with distinct mutational paths despite similar final tumor states.

This paper introduces phyloDE, a method for interspecies differential gene expression analysis that controls FDR and identifies more DE genes with consistent cis-regulatory changes.

This study identifies shared genetic variants and pathways across ten uterine disorders, revealing evolutionary influences on disease risk.

The paper identifies accelerated gene expression and regulatory evolution in mole-rats by integrating transcriptomics and cis-regulatory analysis across species.

This study investigates how germline and somatic genetic variations affect mitochondrial DNA content, mutation patterns, and gene expression in liver tumors across four mouse strains.

The paper investigates how strand-asymmetric processes like replication and transcription influence DNA damage, repair, and mutagenesis, revealing mechanisms that shape cancer genome evolution.

The paper compares gene expression in endometrial epithelial cells across humans, mice, and non-human primates to show convergent evolution of uterine receptivity genes like LIF.

ChIPflow is a pipeline for epigenomic data analysis from raw data to differential analysis, showing that statistical settings affect results depending on chromatin factor dynamics and variability.