Author

Gökmen Zararsız

Erciyes UniversityORCID 0000-0001-5801-1835Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Selçuk KorkmaziD· 2 shared Ahu CepheiD· 1 shared Alparslan DemirayiD· 1 shared Andreas PrlićiD· 1 shared Anne EugsteriD· 1 shared Annekathrin Kränkel· 1 shared Dinçer GöksülükiD· 1 shared Enrico GlaabiD· 1 shared

Activity by Year

2017-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Selçuk KorkmazORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 25, 2025

Multi-Omics Integration Reveals Lipid Metabolic Reprogramming as a Driver of Cystogenesis in Autosomal Dominant Polycystic Kidney Disease (ADPKD)

Gökmen Zararsız, Leila Kianmehr, Alparslan Demiray…·Enrico Glaab

The paper integrates metabolomic and transcriptomic data from ADPKD patients to identify metabolic reprogramming linked to cystogenesis and disease progression.

1 citation

humanmetabolomics

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BioinformaticsScientific ReportsPeer-reviewedNov 15, 2018

Machine learning based classification of cells into chronological stages using single-cell transcriptomics.

Sumeet Pal Singh, Sharan Janjuha, Samata Chaudhuri…·John E. Reid

This paper introduces GERAS, a machine learning framework that classifies single-cell transcriptomes into chronological stages with high accuracy and identifies aging-related factors in zebrafish and human pancreatic cells.

28 citations

zebrafishhuman

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BioinformaticsbioRxivPreprintNov 24, 2017

Quaternary structure evaluation tool for protein assemblies

Selçuk Korkmaz, José M. Duarte, Andreas Prlić…·Peter W. Rose

The paper evaluates quaternary structure annotations in the PDB by comparing prediction methods and develops a web tool for researchers.

1 citation

protein structurestatistical model

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