Andreas Prlić

The paper develops and applies a computable genotype model within the GA4GH Variation Representation Specification to enable precise and interoperable representation of genomic variation data.

SeqRepo is a system for managing local biological sequence collections, offering performance benefits and a new identifier convention for seamless integration of public and private sequences.

The paper improves CE-Symm to detect and analyze protein symmetry and repeats, enhancing applications in classification and evolutionary studies.

The paper evaluates quaternary structure annotations in the PDB by comparing prediction methods and develops a web tool for researchers.

The paper introduces MMTF, a new binary format for macromolecular structures, which is faster and smaller than PDBx/mmCIF, enabling efficient visualization and analysis.