Ferhat Alkan

The paper shows EWSR1::FLI1 fusion drives the production of cancer-specific neoproteins in Ewing sarcoma, revealing a reversible dark proteome with therapeutic potential.

The paper shows that mitochondrial damage can induce therapy-induced senescence in GBM cells through a ROS-cGAS-STING-SASP cascade, outperforming single or dual pathway inhibitors.

The paper shows RNA dicing produces an oncogenic JAK1 isoform, affecting cell proliferation and tumorigenesis, and highlights its therapeutic implications.

Ribo-ODDR improves rRNA depletion in Ribo-seq by designing experiment-specific oligos, increasing sequencing depth and information yield.

The paper introduces BSGatlas, an enhanced genome annotation resource for Bacillus subtilis that integrates multiple sources to improve ncRNA and transcript annotations.