Alejandro Reyes

This paper organizes a community challenge to develop automated virus taxonomy classification tools and evaluates their performance on a combined dataset of expert-curated and metagenomic sequences.

This study investigates how inoculating coffee beans with microbial starter cultures affects sensory attributes, metabolite profiles, and microbial communities during fermentation.

VIRify identifies and classifies viral contigs and prophages from metagenomic data with high accuracy across prokaryotic and eukaryotic viruses.

The paper analyzes prophage distribution across thousands of prokaryotic genomes to explore their diversity and host relationships.

The paper identifies informative regions in viral genomes to improve taxonomy classification by expanding orthologous groups and using machine learning.

This study examines the relationship between microbiome diversity and virome diversity in adult monozygotic twins, finding that microbiome discordance correlates with virome dissimilarity.