Author

Nirvana Nursimulu

University of TorontoORCID 0000-0001-5962-5863Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Assay:metagenomics· 1 Research Focus:software / tool· 1

Frequent Co-Authors

John ParkinsoniD· 3 shared Adam B. GeberiD· 1 shared Alan M MosesiD· 1 shared Alexandra GroteiD· 1 shared Billy Taj· 1 shared David M. CurraniD· 1 shared Denis VoroniniD· 1 shared Drew R. JonesiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersSystems Biology

John ParkinsonORCID

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3 papers

Recent·Most cited

BioinformaticsMicrobiomePeer-reviewedJun 27, 2023

MetaPro: A scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Billy Taj, Mobolaji Adeolu, Xuejian Xiong…·John Parkinson

MetaPro processes and analyzes metatranscriptomic data, providing gene expression profiles and taxonomic breakdowns with improved performance over existing pipelines.

28 citations

metagenomicsstatistical model

𝕏 PostBluesky

Systems BiologybioRxivPreprintOct 12, 2021

Architect: a tool for producing high-quality metabolic models through improved enzyme annotation

Nirvana Nursimulu, Alan M Moses, John Parkinson

Architect improves metabolic model quality by combining enzyme annotations from multiple tools and gap-filling based on likelihood scores.

DOI 10.1101/2021.10.12.464133

statistical modelsoftware / tool

𝕏 PostBluesky

Systems BiologyeLifePeer-reviewedAug 10, 2020

Modeling the metabolic interplay between a parasitic worm and its bacterial endosymbiont allows the identification of novel drug targets

David M. Curran, Alexandra Grote, Nirvana Nursimulu…·John Parkinson

The paper models the metabolic interactions between a parasitic worm and its bacterial endosymbiont to identify potential drug targets.

24 citations

humanstatistical model

𝕏 PostBluesky