Simón Orozco-Arias

PanTEon provides a cross-kingdom framework for reproducible TE classification, benchmarking machine learning methods and highlighting performance variations across TE superfamilies and lineages.

This study identifies TE variation in wild house mice from temperate and tropical environments and finds some TE insertions associated with gene expression and positive selection.

This study uses ancient whole-genome data to show geographically structured selection during the Neolithic transition in Western Eurasia, involving both farmer and hunter-gatherer alleles.

MCHelper automates transposable element library curation across species, improving quality and reducing redundancy and false positives.

The paper analyzes the genome and population genomics of Coffea arabica to reveal its diversification history and breeding-related genetic changes.

The paper identifies three Copia lineage LTR retrotransposons with high similarity across 69 plant genomes, suggesting potential horizontal transfer.