Author

Allegra G. Hawkins

Alex's Lemonade Stand FoundationORCID 0000-0001-6026-3660Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:CITE-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Akira YokoyamaiD· 1 shared Ariel D. SwettiD· 1 shared Arkadii Yakovets· 1 shared Avrohom M. Gottlieb· 1 shared Casey S. GreeneiD· 1 shared Catherine J. PotenskiiD· 1 shared Chanté J. BethelliD· 1 shared Clayton HughesiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperGenomics

Akira YokoyamaORCID

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2 papers

Recent·Most cited

BioinformaticsCell GenomicsPeer-reviewedJun 24, 2026

The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors

Allegra G. Hawkins, Joshua A. Shapiro, Stephanie J. Spielman…·Jaclyn Taroni

The paper introduces a data portal and open-source tools for single-cell transcriptomics of pediatric tumors, providing uniformly processed RNA-seq data and metadata from over 700 samples across 55 cancer types.

18 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky

GenomicsCancer DiscoveryPeer-reviewedDec 31, 2025

Genotype-to-phenotype mapping of somatic clonal mosaicism via single-cell co-capture of DNA mutations and mRNA transcripts

Dennis J. Yuan, John Zinno, Theo Botella…·Dan Avi Landau

The paper develops scG2P to jointly capture DNA mutations and mRNA transcripts in single cells, revealing clonal architectures and phenotypes in aged esophageal tissue.

11 citationstop 4%

humanscRNA-seq

𝕏 PostBluesky