Author

Song Feng

Pacific Northwest National LaboratoryORCID 0000-0001-6070-7268Unclaimed ORCID profile · follow to get notified of new preprints

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Song Feng2 papers · Pacific Northwest National Laboratory

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Systems Biology· 2

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Organism:E. coli· 1 Assay:metabolomics· 1 Assay:proteomics· 1

Frequent Co-Authors

Jordan C. RozumiD· 2 shared Marci Garcia· 2 shared Natalie SadleriD· 2 shared Pavlo BohutskyiiD· 2 shared Zachary JohnsoniD· 2 shared Lindsey N Anderson· 1 shared Margaret Cheung· 1 shared Margaret S. CheungiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 39 mutual co-author links

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2 shared papersSystems Biology

Jordan C. RozumORCID

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2 papers

Recent·Most cited

Systems BiologybioRxivPreprintOct 21, 2026

Cell State Transitions Drive Transcriptome-Proteome Alignment in a Minimal Photoautotroph

Jordan C. Rozum, Xiaolu Li, Young‐Mo Kim…·Song Feng

The paper investigates how cell state transitions in Prochlorococcus marinus MED4 affect transcriptome-proteome alignment through regulatory mechanisms involving RpaB and HimA.

DOI 10.64898/2026.10.20.760503

E. coliproteomics

𝕏 PostBluesky

Systems BiologybioRxivPreprintApr 19, 2026

Extreme genome reduction selectively retains modular regulatory architecture in Prochlorococcus MED4: conserved transcriptional modules reveal core physiological regulatory programs

Zachary Johnson, Natalie Sadler, Marci Garcia…·Pavlo Bohutskyi

This paper identifies conserved transcriptional modules in Prochlorococcus MED4 using RNA-seq data and independent component analysis, revealing core regulatory programs that persist despite extreme genome reduction.

2 citations

bulk RNA-seqstatistical model

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