Zachary Johnson

This study shows that cyanobacteria respond to yeast partners only when co-localized, not just through metabolite exchange.

The paper investigates how cell state transitions in Prochlorococcus marinus MED4 affect transcriptome-proteome alignment through regulatory mechanisms involving RpaB and HimA.

The paper develops a 4D whole-cell model of Prochlorococcus marinus MED4 to show how spatial organization and redox PTMs regulate carbon fixation under light disturbance.

The paper constructs gene regulatory networks for three cyanobacteria, identifies stress-related regulators as high-influence nodes, and highlights their importance for bioproduction engineering.

This paper identifies conserved transcriptional modules in Prochlorococcus MED4 using RNA-seq data and independent component analysis, revealing core regulatory programs that persist despite extreme genome reduction.

The paper decodes the regulatory architecture of Synechococcus elongatus PCC 7942 under oxidative stress, revealing modular responses that balance growth and defense.