Author

Vladimir B. C. de Souza

SIB Swiss Institute of BioinformaticsORCID 0000-0001-6187-0489Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Organism:mouse· 1 Approach:simulation· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Mark D. RobinsoniD· 2 shared Ben T. JordaniD· 1 shared Elizabeth A. Nelson· 1 shared Elizabeth TsengiD· 1 shared Gloria SheynkmaniD· 1 shared Karen K. HirschiiD· 1 shared Sian M. J. HemmingsiD· 1 shared Soraya SeedatiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBioinformatics

Mark D. RobinsonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 8, 2022

Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data

Vladimir B. C. de Souza, Ben T. Jordan, Elizabeth Tseng…·Mark D. Robinson

The paper benchmarks variant callers on long-read RNA-seq data and proposes a pipeline to improve their performance using spliced alignment files.

1 citation

long-read sequencingbulk RNA-seq

𝕏 PostBluesky

GenomicsbioRxivPreprintNov 8, 2019

LincRNAs involved in DCS-induced fear extinction: Shedding light on the transcriptomic dark matter

Stefanie Malan‐Müller, Vladimir B. C. de Souza, Willie M. U. Daniels…·Sian M. J. Hemmings

The paper identifies lincRNAs and their mRNA targets involved in fear extinction induced by D-cycloserine and links them to neurological and psychiatric traits.

DOI 10.1101/834242

mousebulk RNA-seq

𝕏 PostBluesky