Author

Marina Kalinina

Skolkovo Institute of Science and TechnologyORCID 0000-0001-6325-3054Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 3 Research Focus:gene regulatory network inference· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Approach:experimental assay· 2 Research Focus:spatial domain detection· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Dmitri Davidovich PervouchineiD· 3 shared Dmitry Aleksandrovich SkvortsoviD· 3 shared Svetlana Kalmykova· 2 shared Alexey Mironov· 1 shared Changchang CaoiD· 1 shared Marina V. PetrovaiD· 1 shared Roderic GuigóiD· 1 shared Sergei Margasyuk· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersMolecular Biology

Dmitri Davidovich PervouchineORCID

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3 papers

Recent·Most cited

RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing

Sergei Margasyuk, Marina Kalinina, Marina V. Petrova, Dmitry Aleksandrovich Skvortsov, Changchang Cao, Dmitri Davidovich Pervouchine

This study uses RIC-seq to identify long-range RNA structures that influence alternative splicing in human genes.

bioRxiv · Nov 7, 2022 · PreprintMolecular Biology

Conserved long-range base pairings associated with pre-mRNA processing of human protein-coding genes

Svetlana Kalmykova, Marina Kalinina, Stepan Denisov, Alexey Mironov, Dmitry Aleksandrovich Skvortsov, Roderic Guigó, Dmitri Davidovich Pervouchine

The paper identifies 916,360 conserved long-range RNA structures in the human transcriptome and shows their association with pre-mRNA processing.

Nature Communications · Apr 16, 2021Peer-reviewedBioinformatics

Multiple competing RNA structures dynamically control alternative splicing in human ATE1 gene

Marina Kalinina, Dmitry Aleksandrovich Skvortsov, Svetlana Kalmykova, Timofei M. Ivanov, О. А. Донцова, Dmitri Davidovich Pervouchine

The paper identifies two RNA structure modules that dynamically regulate mutually exclusive splicing in the ATE1 gene, revealing their functional roles in splicing outcomes.

Nucleic Acids Research · Nov 28, 2020Peer-reviewedMolecular Biology