Author

Changchang Cao

Chinese Academy of SciencesORCID 0000-0003-4734-8242Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Molecular Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Dmitri Davidovich PervouchineiD· 2 shared Sergei Margasyuk· 2 shared Dmitry Aleksandrovich SkvortsoviD· 1 shared Li GuoiD· 1 shared Maria VlasenokiD· 1 shared Marina KalininaiD· 1 shared Marina V. PetrovaiD· 1 shared Naijing HuiD· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersBioinformatics

Dmitri Davidovich PervouchineORCID

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3 papers

Recent·Most cited

BioinformaticsActa NaturaePeer-reviewedMay 3, 2023

RNAcontacts, a pipeline for predicting contacts from RNA proximity ligation assays

Sergei Margasyuk, Maria Vlasenok, Li Guo…·Dmitri Davidovich Pervouchine

RNAcontacts detects RNA-RNA contacts from proximity ligation assays using a two-pass alignment approach to improve sensitivity and specificity.

6 citations

proteomicsstatistical model

𝕏 PostBluesky

Molecular BiologybioRxivPreprintNov 7, 2022

RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing

Sergei Margasyuk, Marina Kalinina, Marina V. Petrova…·Dmitri Davidovich Pervouchine

This study uses RIC-seq to identify long-range RNA structures that influence alternative splicing in human genes.

1 citation

humanbulk RNA-seq

𝕏 PostBluesky

Molecular BiologybioRxivPreprintAug 9, 2022

CRIC-seq reveals positional rule of PTBP1-mediated long-range RNA looping in splicing regulation

Rong Ye, Naijing Hu, Changchang Cao…·Yuanchao Xue

CRIC-seq identifies PTBP1-mediated RNA loops that regulate splicing by position-dependent mechanisms, revealing how disruptions in these loops contribute to cancer-related splicing defects.

1 citation

humanbulk RNA-seq

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