Elena Denisenko

This study uses spatial transcriptomics to identify tumour-intrinsic and microenvironmental features linked to survival in high-grade serous ovarian carcinoma.

The paper identifies widespread transcription initiation at microsatellites across species and develops deep learning models to predict STR-associated transcription and its impact on disease variants.

The paper compares single-cell and single-nucleus RNA-seq workflows in adult mouse kidneys to identify protocol-specific biases in cell type recovery and transcriptional profiles.

The paper identifies transcriptionally induced enhancers in macrophages infected with Mycobacterium tuberculosis and links them to immune gene activation.

The paper identifies transcribed enhancers in mouse macrophages during activation and shows their association with gene expression and inflammation-related transcription factors.

IRNdb is a database of immunologically relevant non-coding RNAs that integrates experimentally supported interactions and annotations to aid in studying ncRNA regulation in the immune system.