Author

Raphael J.L. Townshend

Stanford UniversityORCID 0000-0001-6362-1451Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Assay:proteomics· 1 Organism:yeast· 1

Frequent Co-Authors

Adrian L. SanborniD· 2 shared Akshay Tambe· 1 shared April Schleck· 1 shared Ayah AbdeldayemiD· 1 shared Benjamin T. YehiD· 1 shared Brandon AndersoniD· 1 shared Brent TownshendiD· 1 shared Connor J. StephensiD· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Adrian L. SanbornORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 13, 2023

ATOM-1: A Foundation Model for RNA Structure and Function Built on Chemical Mapping Data

Nicholas R. Boyd, Brandon Anderson, Brent Townshend…·Raphael J.L. Townshend

ATOM-1 is an RNA foundation model trained on chemical mapping data, enabling state-of-the-art RNA prediction tasks through small probe neural networks.

23 citations

deep learningexperimental assay

𝕏 PostBluesky

Molecular BiologyeLifePeer-reviewedApr 27, 2021

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

Adrian L. Sanborn, Benjamin T. Yeh, Jordan T. Feigerle…·Roger D. Kornberg

The paper identifies 150 transcriptional activation domains in yeast, shows their binding to Mediator, and develops a neural network to predict ADs across species.

164 citationstop 1%

yeastproteomics

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